Jannink, J.    

Firstname:J. 
Surname:Jannink 
Email: 
Institute:Institute for Genomic Diversity, Cornell University, Ithaca, NY 14853 
Homepage: 

32 publications (0 read)





Publications as Author



2025

Evaluating a cassava crop growth model by optimizing genotype-specifc parameters using multienvironment trial breeding data, Okoma, P. M., Kayondo, S. I., Rabbi, I. Y., Moreno-Cadena, L. P., Hoogenboom, G. and Jannink, J., in: Frontiers in Plant Science, volume 16, number -: 1535058, pages 1-15, ISSN 1664-462X, 2025. [DOI]
 

2024

Evaluating breeding for broad versus narrow adaptation for cassava in Nigeria using stochastic simulation, Bakare, M. A., Kayondo, S. I., Kulakow, P., Rabbi, I. Y. and Jannink, J., in: Crop Science, pages 1-14, ISSN 0011-183X, 2024. [DOI]
 

2022

Breedbase: a digital ecosystem for modern plant breeding, Morales, N., Ogbonna, A. C., Ellebrock, B., Bauchet, G. J., Tantikanjana, T., Tecle, I. Y., Powell, A., Lyon, D ., Menda, N., Simoes, C. C., Saha, S., Hosmani, P., Flores, M., Panitz, N., Preble, R. S., Agbona, A ., Rabbi, I. Y., Kulakow, P., Peteti, P., Kawuki, R.*, Ezuma, W.*, Kanaabi, M.*, Chelangat, D. M.*, Uba, E.*, Olojede, A. O.*, Onyeka, J.*, Shah, T., Karanja, M., Egesi, C., Tufan, H. A., Agre, A. P., Asfaw, A., Jannink, J., Wolfe, M., Birkett, C. L., Waring, D. J., Hershberger, J. M., Gore, M. A., Robbins, K., Rife, T., Courtney, C., Poland, J., Arnaud, E., Laporte, M. A., Kulembeka, H.*, Salum, K.*, Mrema, E.*, Brown, A., Bayo, S., Uwimana, B., Akech, V., Yencho, C., de Boeck, B., Campos, H., Swennen, R., Edwards, J. D. and Mueller, L., in: G3-Genes Genomes Genetics, volume 12, number 7: jkac078, pages 1-12, ISSN 2160-1836, 2022. [DOI]
 
Exploring genotype by environment interaction on cassava yield and yield related traits using classical statistical methods, Bakare, M. A., Kayondo, S. I., Aghogho, C. I., Wolfe, M., Parkes, E., Kulakow, P., Egesi, C., Rabbi, I. Y. and Jannink, J., in: PloS ONE, volume 17, number 7: e0268189, pages 1-24, ISSN 1932-6203, 2022. [DOI]
 
Parsimonious genotype by environment interaction covariance models for cassava (Manihot esculenta), Bakare, M. A., Kayondo, S. I., Aghogho, C. I., Wolfe, M., Parkes, E., Kulakow, P., Egesi, C., Jannink, J. and Rabbi, I. Y., in: Frontiers in Plant Science, volume 13, number -: 978248, pages 1-18, ISSN 1664-462X, 2022. [DOI]
 

2021

Genomic mating in outbred species: predicting cross usefulness with additive and total genetic covariance matrices, Wolfe, M., Chan, A. W., Kulakow, P., Rabbi, I. Y. and Jannink, J., in: Genetics, volume 219, number 3, pages 1-14, ISSN 0016-6731, 2021. [DOI]
 

2020

Genome-wide association analysis reveals new insights into the genetic architecture of defensive, agro-morphological and quality-related traits in cassava, Rabbi, I. Y., Kayondo, S. I., Bauchet, G. J., Yusuf, M., Aghogho, C. I., Ogunpaimo, K., Uwugiaren, R., Smith, I. A., Peteti, P., Agbona, A ., Parkes, E., Ezenwaka, L.*, Wolfe, M., Jannink, J., Egesi, C. and Kulakow, P., in: Plant Molecular Biology, pages 1-19, ISSN 0167-4412, 2020. [DOI]
 
Genomic prediction and quantitative trait locus discovery in a cassava training population constructed from multiple breeding stages, Somo, M., Kulembeka, H.*, Mtunda, K.*, Mrema, E.*, Salum, K.*, Wolfe, M., Rabbi, I. Y., Egesi, C., Kawuki, R.*, Ozimati, A.*, Lozano, R. and Jannink, J., in: Crop Science, volume 60, number 2, pages 896-913, ISSN 0011-183X, 2020. [DOI]
 
Improving root characterisation for genomic prediction in cassava, Yonis, B. O., Del Carpio, D. P., Wolfe, M., Jannink, J., Kulakow, P. and Rabbi, I. Y., in: Scientific Reports, volume 10, number -: 8003, pages 1-12, ISSN 2045-2322, 2020. [DOI]
 

2019

Historical introgressions from a wild relative of modern cassava improved important traits and may be under balancing selection, Wolfe, M., Bauchet, G. J., Chan, A. W., Lozano, R., Ramu, P., Egesi, C., Kawuki, R.*, Kulakow, P., Rabbi, I. Y. and Jannink, J., in: Genetics, pages 1-15, ISSN 0016-6731, 2019. [DOI]
 
Genetic correlation, genome-wide association and genomic prediction of portable NIRS predicted carotenoids in cassava roots, Ikeogu, U. N., Akdemir, D., Wolfe, M., Okeke, U. G., Amaefula, C.*, Jannink, J. and Egesi, C., in: Frontiers in Plant Science, volume 10, number : 1570, pages 1-11, ISSN 1664-462X, 2019. [DOI]
 

2018

Genome-wide association mapping and genomic prediction for CBSD resistance in Manihot esculenta, Kayondo, I. S.*, Del Carpio, D. P., Lozano, R., Ozimati, A.*, Wolfe, M., Baguma, Y.*, Gracen, V. E.*, Offei, S.*, Ferguson, M., Kawuki, R. S.* and Jannink, J., in: Scientific Reports, volume 8, number 1549, pages 1-12, ISSN 2045-2322, 2018. [DOI]
 
Training population optimization for prediction of Cassava Brown Streak Disease Resistance in west African clones, Ozimati, A.*, Kawuki, R. S.*, Ezuma, W.*, Kayondo, I. S.*, Wolfe, M., Lozano, R., Rabbi, I. Y., Kulakow, P. and Jannink, J., in: G3-Genes Genomes Genetics, volume 8, pages 3903-3913, ISSN 2160-1836, 2018. [DOI]
 
Regional heritability mapping provides insights into Dry Matter (DM) Content in African white and yellow cassava populations, Okeke, U. G., Akdemir, D., Rabbi, I. Y., Kulakow, P. and Jannink, J., in: Plant Genome, volume 11, number 1, pages 1-18, ISSN 1940-3372, 2018.
 
Improving genomic prediction in cassava field experiments by accounting for interplot competition, Elias, A., Rabbi, I. Y., Kulakow, P. and Jannink, J., in: G3-Genes Genomes Genetics, volume 8, pages 933-944, ISSN 2160-1836, 2018. [DOI]
 
Improving genomic prediction in cassava field experiments using spatial analysis, Elias, A., Rabbi, I. Y., Kulakow, P. and Jannink, J., in: G3-Genes Genomes Genetics, volume 8, pages 53-62, ISSN 2160-1836, 2018. [DOI]
 
Genome-wide association study of resistance to cassava green mite pest and related traits in cassava, Ezenwaka, L.*, Del Carpio, D. P., Jannink, J., Rabbi, I. Y., Danquah, E.*, Asante, I.*, Danquah, A.*, Blay, E.* and Egesi, C., in: Crop Science, volume 58, pages 1907-1918, ISSN 0011-183X, 2018. [DOI]
 

2017

Prospects for genomic selection in cassava breeding, Wolfe, M., Del Carpio, D. P., Alabi, O., Ezenwaka, L.*, Ikeogu, U. N., Kayondo, I. S.*, Lozano, R., Okeke, U. G., Ozimati, A.*, Ezuma, W.*, Egesi, C., Kawuki, R. S.*, Kulakow, P., Rabbi, I. Y. and Jannink, J., in: Plant Genome, volume 10, number 3, pages 1-19, ISSN 1940-3372, 2017. [DOI]
 
Genome-wide association mapping of correlated traits in cassava: dry matter and total carotenoid content, Rabbi, I. Y., Udoh, L. I., Wolfe, M., Parkes, E., Gedil, M., Dixon, A., Ramu, P., Jannink, J. and Kulakow, P., in: Plant Genome, volume 10, number 3, pages 1-14, ISSN 1940-3372, 2017. [DOI]
 
Rapid analyses of dry matter content and carotenoids in fresh cassava roots using a portable visible and near infrared spectrometer (Vis/NIRS), Ikeogu, U. N., Devarieux, A., Dufour, D., Ceballos, H., Egesi, C. and Jannink, J., in: PloS ONE, volume 12(12):, number 12:e0188918, pages 1-17, ISSN 1932-6203, 2017. [DOI]
 
Accuracies of univariate and multivariate genomic prediction models in African cassava, Okeke, U. G., Akdemir, D., Rabbi, I. Y., Kulakow, P. and Jannink, J., in: Genetics Selection Evolution, volume 49, number 88, pages 1-10, ISSN 0999-193X, 2017. [DOI]
 

2016

Genome-wide association and prediction reveals genetic architecture of cassava mosaic disease resistance and prospects for rapid genetic improvement, Wolfe, M., Rabbi, I. Y., Egesi, C. N.*, Hamblin, M., Kawuki, R. S.*, Kulakow, P., Lozano, R., Carpio, D. P., Ramu, P. and Jannink, J., in: Plant Genome, volume 9, number 2, pages 1-13, ISSN 1940-3372, 2016. [DOI]
 
Marker-based estimates reveal significant non-additive effects in clonally propagated cassava (Manihot esculenta): implications for the prediction of total genetic value and the selection of varieties, Wolfe, M., Kulakow, P., Rabbi, I. Y. and Jannink, J., in: G3-Genes Genomes Genetics, pages 1-41, ISSN 2160-1836, 2016. [DOI]
 
Empirical validation of genetic gains from genomic selection in cassava breeding, Alabi, O., Kulakow, P., Jannink, J., Rabbi, I. Y., Wolfe, M., Tufan, H. A., Iluebbey, P., Ikpan, A. and Vernon, G.*, Abstract in World Congress on Root & Tuber Crops (WCRTC), Nanning, Guangxi, China, January 18-22, 2016.
 

2014

Genetic mapping using genotyping-by-sequencing in the clonally propagated cassava, Rabbi, I. Y., Hamblin, M., Gedil, M., Kulakow, P., Ferguson, M., Ikpan, A., Ly, D. and Jannink, J., in: Crop Science, volume 54, pages 1-13, ISSN 0011-183X, 2014. [DOI]
 
solGS: a web-based tool for genomic selection, Tecle, I. Y., Edwards, J. D., Menda, N., Egesi, C. N.*, Rabbi, I. Y., Kulakow, P., Kawuki, R. S.*, Jannink, J. and Mueller, L., in: BMC Bioinformatics, volume 15, number 398, pages 1-9, ISSN 1471-2105, 2014. [DOI]
 
High-resolution mapping of resistance to cassava mosaic geminiviruses in cassava using genotyping-by-sequencing and its implications for breeding, Rabbi, I. Y., Hamblin, M., Kumar, P. L., Gedil, M., Ikpan, A., Jannink, J. and Kulakow, P., in: Virus Research, volume 186, pages 87-96, ISSN 0168-1702, 2014. [DOI]
 

2013

Relatedness and genotype x environment interaction affect prediction accuracies in genomic selection: a study in cassava, Ly, D., Hamblin, M., Rabbi, I. Y., Gedil, M., Bakare, M. A., Gauch Jr., H., Okechukwu, R., Dixon, A.*, Kulakow, P. and Jannink, J., in: Crop Science, volume 53, number 4, pages 1312-1325, ISSN 0011-183X, 2013. [DOI]
 
Genetic studies and breeding using next-generation sequencing markers in cassava, Rabbi, I. Y., Delphine, L.*, Kulakow, P., Gedil, M., Hamblin, M. and Jannink, J., Abstract, P. 314 in the book of abstracts and programme of the 12th Triennial Symposium of International Society for Tropical Root Crops-Africa Branch (ISTRC-AB), 30 - 5, October, Alisa Hotel, Accra, Ghana, 2013.
 

2012

Training to validation population relatedness affects genomic prediction accuracy: a cassava case study, Ly, D., Hamblin, M., Rabbi, I. Y., Gedil, M., Bakare, M. A., Okechukwu, R., Dixon, A.*, Kulakow, P. and Jannink, J., Abstract, p. 378 in the Book of Abstracts, 16th Triennial Symposium of the International Society for Tropical Root Crops (ISTRC), 23-28th September, 2012.
 
Genome-wide association study of important agronomic traits in cassava using genotyping-by-sequencing SNP data, Rabbi, I. Y., Gedil, M., Kulakow, P., Hamblin, M. and Jannink, J., Abstract, in Program and Abstracts, Second Scientific Conference of the Global Cassava Partnership for the 21st Century (GCP21-II). June 18-22, Kampala, Uganda., 2012.
 
Next generation cassava breeding: accelerating the rate of genetic improvement in cassava breeding, Tufan, H. A., Jannink, J., Hamblin, M., Setter, T.*, Acharya, C., Mueller, L., Kulakow, P., Rabbi, I. Y., Gedil, M., Bakare, M. A., Baguma, Y.*, Kawuki, R. S.*, Pariyo, A., Egesi, C. N.*, Okogbenin, E.*, Prochnik, S. and Coffman, R., Abstract, in the Book of Abstracts, 16th Triennial Symposium of the International Society for Tropical Root Crops (ISTRC), 23 - 28, September, 2012.