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| Loss of function of MusaPUB genes in banana can provide enhanced resistance to bacterial wilt disease, Tripathi, L., Ntui, V. O., Muiruri, K. S., Shah, T. and Tripathi, J., in: Communications Biology, volume 8, number -: 708, pages 1-12, ISSN 2399-3642, 2025. [DOI] |
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| Genome-wide comparison reveals large structural variants in cassava landraces, Landi, M ., Carluccio, A. V., Shah, T., Niazi, A., Stavolone, L., Falquet, L., Gisel, A. and Bongcam-Rudloff, E., in: BMC Genomics, volume 26, number -: 362, pages 1-13, ISSN 1471-2164, 2025. [DOI] |
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| Developing pangenomes for large and complex plant genomes and their representation formats, Ruperao, P., Rangan, P.*, Shah, T., Sharma, V., Rathore, A., Mayes, S. and Pandey, M. K., in: Journal of Advanced Research, pages 1-18, ISSN 2090-1232, 2025. [DOI] |
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| Genome-wide association study for yield and quality of granulated cassava processed product, Aghogho, C. I., Kayondo, S. I., Eleblu, J. S. Y.*, Ige, A. D., Asante, I.*, Offei, S.*, Parkes, E., Egesi, C. N.*, Mbanjo, E., Shah, T., Kulakow, P. and Rabbi, I. Y., in: Plant Genome, volume 17, number -: e20469, pages 1-19, ISSN 1940-3372, 2024. [DOI] |
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| Identification of the Loci associated with resistance to Banana Xanthomonas Wilt (Xanthomonas vasicola pv. musacearum) using DArTSeq markers and continuous mapping, Uwimana, B., Nakato, V., Kanaabi, R., Nasuuna, C., Mahuku, G., Mwanje, G., Akech, V., Vuylsteke, M., Swennen, R. and Shah, T., in: Horticulturae, volume 10, number 1: 87, pages 1-15, ISSN 2311-7524, 2024. [DOI] |
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| Q&A: Methods for estimating genetic gain in sub-Saharan Africa and achieving improved gains, Dieng, I., Gardunia, B., Covarrubias-Pazaran, G., Gemenet, D., Trognitz, B., Ofodile, S., Fowobaje, K. R., Ntukidem, S., Shah, T., Imoro, S., Tripathi, L., Mushoriwa, H ., Mbabazi, R., Salvo, S. and Derera, J., in: Plant Genome, volume 17, number -: e20471, pages 1-16, ISSN 1940-3372, 2024. [DOI] |
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| Bioinformatics for plant genetics and breeding research, Naik, Y. D.*, Zhao, C.*, Channale, S., Nayak, S. N., Bhutia, K. L.*, Gautam, A.*, Kumar, R.*, Niranjan, V.*, Shah, T., Mott, R., Punnuri, S., Pandey, M. K., Wang, X.*, Varshney, R. K. and Thudi, M., pages 33-64, chapter 3, Springer, ISBN 978-981-99-4672-3, 2024. [DOI] |
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| Long read sequencing and assembly of wild diploid relatives and cultivars in support of banana breeding programs, Chen, A., Zhou, X., Decker, K., Du, E., Brown, A., Aitken, E. A. B., Shah, T., Uwimana, B., Hresko, C., Swennen, R. and Lowdon, R. F., in: bioRxiv preprint, pages 1-22, 2024. [DOI] |
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| Genetic diversity of cassava landraces and documentation of farmer's knowledge in Lamu, Kenya, Mutoni, C. K., Nzuve, F. M.*, Miano, D.*, Kivuva, B. M.*, Obare, I. J.*, Shah, T. and Ferguson, M., in: Genetic Resources and Crop Evolution, volume 71, number 5, pages 2189-2201, ISSN 0925-9864, 2024. [DOI] |
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| Collection of cassava landraces and associated farmers' knowledge, genetic diversity and viral incidence assessment in western Kenya, Obare, I. J.*, Charimbu, M. K.*, Mafurah, J.*, Mutoni, C. K.*, Woyengo, V. W.*, Shah, T. and Ferguson, M., in: Genetic Resources and Crop Evolution, volume 71, pages 2449-2466, ISSN 0925-9864, 2024. [DOI] |
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| Targeted knockout of early nodulin-like 3 (MusaENODL3) gene in banana reveals its function in resistance to Xanthomonas wilt disease, Ntui, V. O., Tripathi, J., Shah, T. and Tripathi, L., in: Plant Biotechnology Journal, volume 22, number 5, pages 1101-1112, ISSN 1467-7644, 2024. [DOI] |
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| Standard Operating Procedure (SOP) for digital imaging and quantification of banana weevil damage using Ilastik and ImageJ (Fiji): SOP11, Mwanje, G., Shah, T., Swennen, R. and Nakato, V., International Institute of Tropical Agriculture, 2024. |
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| Candidate genes for field resistance to cassava brown streak disease revealed through the analysis of multiple data sources, Ferguson, M., Eyles, R. P., Garcia-Oliveira, A. L., Kapinga, F., Masumba, E. A., Amuge, T., Bredeson, J. V., Rokhsar, D. S., Lyons, J. B., Shah, T., Rounsley, S. and Mkamilo, G.*, in: Frontiers in Plant Science, volume 14, number -: 1270963, pages 1-16, ISSN 1664-462X, 2023. [DOI] |
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| Collection and characterization of cassava germplasm in Comoros, Ferguson, M., Ntawuruhunga, P., Fouad, M. O.*, Hassane, O. K. M.*, Charmila, M. A.*, Hamza, A. A.*, Mohamed, N. A.*, Dieng, I., Njukwe, E. and Shah, T., in: Genetic Resources and Crop Evolution, pages 1-21, ISSN 0925-9864, 2023. [DOI] |
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| EpiCass and CassavaNet4Dev advanced bioinformatics workshop, Gisel, A., Stavolone, L ., Olagunju, T., Landi, M., van Damme, R., Niazi, A., Falquet, L., Shah, T. and Bongcam-Rudloff, E., in: EMBnet.journal, volume 29, number -: e1045, pages 1-6, ISSN 2226-6089, 2023. [DOI] |
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| The progression in developing genomic resources for crop improvement, Ruperao, P., Rangan, P.*, Shah, T., Thakur, V.*, Kalia, S.*, Mayes, S. and Rathore, A., in: Life, volume 13, number 8: 1668, pages 1-28, ISSN 2075-1729, 2023. [DOI] |
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| Haplotype-resolved genome of heterozygous African cassava cultivar TMEB117 (Manihot esculenta), Landi, M., Shah, T., Falquet, L., Niazi, A., Stavolone, L., Bongcam-Rudloff, E. and Gisel, A., in: Scientific Data, volume 10, number -: 887, pages 1-9, ISSN 2052-4463, 2023. [DOI] |
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| Breedbase: a digital ecosystem for modern plant breeding, Morales, N., Ogbonna, A. C., Ellebrock, B., Bauchet, G. J., Tantikanjana, T., Tecle, I. Y., Powell, A., Lyon, D ., Menda, N., Simoes, C. C., Saha, S., Hosmani, P., Flores, M., Panitz, N., Preble, R. S., Agbona, A ., Rabbi, I. Y., Kulakow, P., Peteti, P., Kawuki, R.*, Ezuma, W.*, Kanaabi, M.*, Chelangat, D. M.*, Uba, E.*, Olojede, A. O.*, Onyeka, J.*, Shah, T., Karanja, M., Egesi, C., Tufan, H. A., Agre, A. P., Asfaw, A., Jannink, J., Wolfe, M., Birkett, C. L., Waring, D. J., Hershberger, J. M., Gore, M. A., Robbins, K., Rife, T., Courtney, C., Poland, J., Arnaud, E., Laporte, M. A., Kulembeka, H.*, Salum, K.*, Mrema, E.*, Brown, A., Bayo, S., Uwimana, B., Akech, V., Yencho, C., de Boeck, B., Campos, H., Swennen, R., Edwards, J. D. and Mueller, L., in: G3-Genes Genomes Genetics, volume 12, number 7: jkac078, pages 1-12, ISSN 2160-1836, 2022. [DOI] |
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| Geographical distribution and genetic diversity of the banana fusarium wilt fungus in Laos and Vietnam, Chittarath, C., Nguyen, C. H.*, Bailey, W. C.*, Zheng, S. J., Mostert, D.*, Viljoen, A.*, Tazuba, A., Ocimati, W., Kearsley, E., Chi, T. Y.*, Tho, N. T.*, Hung, N. T.*, Dita, M.*, Shah, T., Karanja, M., Mahuku, G. and Blomme, G., in: Journal of Fungi, volume 8, number 1: 46, pages 1-15, ISSN 2309-608X, 2022. [DOI] |
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| The banana genome hub: a community database for genomics in the Musaceae, Droc, G., Martin, G., Guignon, V., Summo, M., Sempere, G., Durant, E., Soriano, A., Baurens, F. C., Cenci, A., Breton, C., Shah, T., Aury, J. M., Ge, X. J.*, Harrison, P. H.*, Yahiaoui, N., D'Hont, A. and Rouard, M., in: Horticulture Research, volume 9, number -: uhac221, pages 1-10, ISSN 2662-6810, 2022. [DOI] |
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| Continuous mapping identifies Loci associated with weevil resistance [Cosmopolites sordidus (Germar)] in a triploid banana population, Uwimana, B., Mwanje, G., Batte, M., Akech, V., Shah, T., Vuylsteke, M. and Swennen, R., in: Frontiers in Plant Science, volume 12, number -: 753241, pages 1-14, ISSN 1664-462X, 2021. [DOI] |
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| Collection, genotyping and virus elimination of cassava landraces from Tanzania and documentation of farmer knowledge, Ferguson, M., Tumwegamire, S., Chidzanga, C., Shah, T., Mtunda, K.*, Kulembeka, H.*, Kimata, B.*, Tollano, S.*, Stephen, M.*, Mpayo, E.*, Mohamedi, S.*, Kasele, S.*, Palangyo, E.*, Armachius, J.*, Ali, A. H.*, Sichalwe, K.*, Matondo, D. G.*, Masisila, F. F.*, Matumbo, Z.*, Kidunda, B.*, Arati, A. C., Muiruri, R., Munguti, F.*, Abass, A., Abberton, M. and Mkamilo, G.*, in: PloS ONE, volume 16, number 8: e0255326, pages 1-21, ISSN 1932-6203, 2021. [DOI] |
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| Genetic diversity and population structure of soybean lines adapted to sub-Saharan Africa using Single Nucleotide Polymorphism (SNP) markers, Chander, S., Garcia-Oliveira, A. L., Gedil, M., Shah, T., Otusanya, G. O., Asiedu, R. and Chigeza, G., in: Agronomy, volume 11, number 3: 604, pages 1-11, ISSN 2073-4395, 2021. [DOI] |
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| CRISPR/Cas9-mediated editing of DMR6 orthologue in banana (Musa spp.) confers enhanced resistance to bacterial disease, Tripathi, J., Ntui, V. O., Shah, T. and Tripathi, L., in: Plant Biotechnology Journal, volume 19, pages 1291-1293, ISSN 1467-7644, 2021. [DOI] |
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| Open data kit (ODK) in crop farming: mobile data collection for seed yam tracking in Ibadan, Nigeria, Ouma, T., Kavoo, A. M.*, Wainaina, C.*, Ogunya, B., Karanja, M., Kumar, P. L. and Shah, T., in: Journal of Crop Improvement, volume 33, number 5, pages 605-619, ISSN 1542-7528, 2019. [DOI] |
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| Agromorphologic, genetic and methylation profiling of Dioscorea and Musa species multiplied under three micropropagation systems, Jekayinoluwa, T., Gueye, B., Bhattacharjee, R., Osibanjo, O.*, Shah, T. and Abberton, M., in: PLoS ONE, volume 14, number 5: e0216717, pages 1-17, ISSN 1932-6203, 2019. [DOI] |
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| Molecular basis of disease resistance in banana progenitor Musa Balbisiana against Xanthomonas Campestris pv. Musacearum, Tripathi, L., Tripathi, J., Shah, T., Muiruri, K. S. and Katari, M. S., in: Scientific Reports, volume 9, number : 7007, pages 1-17, ISSN 2045-2322, 2019. [DOI] |
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| A global overview of cassava genetic diversity, Ferguson, M., Shah, T., Kulakow, P. and Ceballos, H., in: PloS ONE, volume 14, number 11: e0224763, pages 1-16, ISSN 1932-6203, 2019. [DOI] |
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| Genome-wide identification and analysis of Arabidopsis Sodium Proton Antiporter (NHX) and Human Sodium Proton Exchanger (NHE) Homologs in Sorghum bicolor, Kumari, P. H.*, Kumar, S. A.*, Ramesh, K., Reddy, P. S., Nagaraju, M.*, Prakash, A. B., Shah, T., Henderson, A., Srivastava, R. K., Rajasheker, G.*, Chitikineni, A.*, Varshney, R. K., Rathnagiri, P.*, Narasu, M. L.* and Kishor, P. B. K.*, in: Genes, volume 9, pages 1-18, ISSN 2073-4425, 2018. [DOI] |
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| QTL mapping for pest and disease resistance in cassava and coincidence of some QTL with introgression regions derived from Manihot glaziovii, Nzuki, I., Katari, M. S., Bredeson, J. V., Masumba, E.*, Kapinga, F.*, Salum, K.*, Mkamilo, G.*, Shah, T., Lyons, J. B., Rokhsar, D. S., Rounsley, S., Myburg, A. A.* and Ferguson, M., in: Frontiers in Plant Science, volume 8, number 1168, pages 1-15, ISSN 1664-462X, 2017. [DOI] |
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| Trait associations in diversity panels of the two common bean (Phaseolus vulgaris L.) gene pools grown under well-watered and water-stress conditions, Asfaw, A., Ambachew, D.*, Shah, T. and Blair, M. W., in: Frontiers in Plant Science, volume 8, number 733, pages 1-15, ISSN 1664-462X, 2017. [DOI] |
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| Genomic resources for pigeonpea, Odeny, D., Shah, T. and Saxena, R. K., in: Legume Perspectives, volume 11, pages 33-34, ISSN 2340-1559, 2016. |
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